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AI & Drug Discovery Resource Directory

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1) AI & ML Training Programs 

 

1A Online Courses & Certifications

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​MIT Sloan: Artificial Intelligence in Pharma and Biotech

EMBL-EBI: Machine Learning in Drug Discovery

Coursera: AI for Medicine Specialization

Cloud; Drug Discovery by Google

Enjoy Algorithms: Drug Discovery Training

Kaggle Drug Discovery for Beginners 

Insilico Medicine's Drug Target Identification Course
Udemy : Drug Discovery AI Training 

Udemy: Accelerated Drug Discovery AI Training

Coursera: Drug Discovery AI Training 

University of Florida PHA 6241: Introduction to Artificial Intelligence
AI in Drug Discovery and Clinical Trials Tonex Training

Schrödinger Learning Center AI for Computational Chemistry & Molecular Docking

DeepChem (Open-Source Library for AI in Chemistry) ​​

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​​​1B Workshops & Conferences (upcoming Boston November 2025)

​AI Drug Discovery & Development Summit – Boston, USA

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2) AI Platforms & Tools for Drug Discovery

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2A  AI-Driven Drug Discovery Platforms

 

BenevolentAI

NeuroSnap AI

Atomwise

Insilico Medicine - drug discovery, biomarker development, and aging research

Exscientia - AI and Drug Discovery

Iktos - AI and Drug Discovery De Nuovo drugs

​Schrödinger's LiveDesign Learning Module

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2B. Open-Source AI Frameworks for Drug Discovery

 

Protenix - biomolecular interactions- alphafold3

Chai-1 via Neurosnap -similar to AlphaFold3 for predicting protein-ligand 

ParaSurf predicts antibody-antigen binding sites

DeepChem

Chemprop

RDKit

AlphaFold

Biovista 

Google AutoML

Nvidia: Clara 

Nvidia: Virtual Screening Pipeline

IBM Watson for Drug Discovery

AWS Health AI Services

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3) Key Databases for Drug Discovery Research

 

Chemical & Molecular Databases

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PubChem

ChEMBL

DrugBank

ZINC Database

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Proteins / Genomics

Protein Data Bank (PDB)

GenBank

UniProt

GTEx

 

Clinical & Biomedical Data

ClinicalTrials.gov

PharmGKB

OMIM (Online Mendelian Inheritance in Man)

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4) Suggested Review Reading Materials 

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  • Artificial Intelligence in Drug Development
    Published in Nature Medicine, this review explores the state-of-the-art applications of AI in small-molecule drug development since 2019.
    Link: https://www.nature.com/articles/s41591-024-03434-4​

  • Artificial Intelligence in Drug Discovery and Development
    This comprehensive review highlights the impactful use of AI in various areas of the pharmaceutical sector, including drug discovery, development, and repurposing.
    Link: https://pmc.ncbi.nlm.nih.gov/articles/PMC7577280/​

  • Use of Artificial Intelligence in Drug Development
    Published in JAMA Network Open, this cross-sectional study investigates the scope and breadth of AI use in drug development.
    Link: https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2819343​

  • Artificial Intelligence for Drug Discovery: Are We There Yet?
    This review discusses the use of AI in the three pillars of drug discovery: diseases, targets, and therapeutic modalities, with a focus on small-molecule drugs.
    Link: https://www.annualreviews.org/doi/10.1146/annurev-pharmtox-040323-040828​

  • Explainable Artificial Intelligence for Drug Discovery and Development: A Comprehensive Survey
    This survey provides an overview of current state-of-the-art explainable AI techniques in drug discovery, addressing challenges and limitations.
    Link: https://arxiv.org/abs/2309.12177​

  • Artificial Intelligence Enhances Drug Discovery and Development
    This article discusses how booming AI tools are revolutionizing nearly every stage of the drug discovery process, indicating substantial potential to transform the speed and economics of drug development.
    Link: https://academic.oup.com/nsr/article/11/3/nwad303/7453682​

  • Harnessing Artificial Intelligence in Drug Discovery and Development
    This article explores how AI is being utilized to analyze vast datasets of clinical and molecular data, revealing unexpected efficacies of certain drugs against unrelated diseases.
    Link: https://www.accc-cancer.org/acccbuzz/blog-post-template/accc-buzz/2024/12/20/harnessing-artificial-intelligence-in-drug-discovery-and-development​

  • The Role of AI in Drug Discovery: Challenges, Opportunities, and Strategies
    This review highlights the potential of AI in drug discovery and provides insights into the challenges and opportunities for realizing its potential in this field.
    Link: https://arxiv.org/abs/2212.08104​

  • Artificial Intelligence in Drug Discovery: Applications and Techniques
    This survey provides an overview of AI applications in drug discovery, discussing relevant AI techniques, model architectures, and learning paradigms.
    Link: https://arxiv.org/abs/2106.05386​

  • Artificial Intelligence and Machine Learning in Drug Development
    This special issue welcomes papers on AI/ML applications in various aspects of drug development, including target identification, protein networks, and drug-target complex characterization.
    Link: https://www.mdpi.com/journal/ijms/special_issues/AI_ML_Drug_Development

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© 2025 by Center of Excellence – Consortium of Educators.

 

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